BlebQuant is developed for automated detection and quantification of blebbing. The program is a MATLAB-based graphical user interface written by Shangbin Chen.
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Demo data (images of YFP-labelled dendrites, recorded with in vivo 2-photon microscopy in the mouse cortex, in ZIP-archived TIFF files):
Before ischemia
During ischemia
After reperfusion
Chen S, Tran S, Sigler A, Murphy TH. Automated and quantitative image analysis of ischemic dendritic blebbing using in vivo 2-photon microscopy data. J Neurosci Methods. 2011;195(2):222-231. doi:10.1016/j.jneumeth.2010.12.018